DOKK / manpages / debian 12 / seqan-apps / yara_indexer.1.en
YARA_INDEXER(1) YARA_INDEXER(1)

yara_indexer - Yara Indexer

yara_indexer [OPTIONS] <REFERENCE FILE>

Yara - Yet Another Read Aligner.

See http://www.seqan.de/projects/yara for more information.

(c) Copyright 2011-2014 by Enrico Siragusa.

(c) Copyright 2013 by NVIDIA Corporation.

A reference genome file. Valid filetypes are: .sam[.*], .raw[.*], .gbk[.*], .frn[.*], .fq[.*], .fna[.*], .ffn[.*], .fastq[.*], .fasta[.*], .faa[.*], .fa[.*], .embl[.*], and .bam, where * is any of the following extensions: gz, bz2, and bgzf for transparent (de)compression.

Display the help message.
Display version information.
Displays verbose output.

Specify a filename prefix for the reference genome index. Default: use the filename prefix of the reference genome.
Specify a temporary directory where to construct the index. Default: use the output directory.
yara_indexer 0.9.11 [tarball]