DOKK / manpages / debian 12 / seqan-raptor / raptor-socks-lookup-kmer.1.en
RAPTOR(1) RAPTOR(1)

Raptor - A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

Prints the help page.
Prints the help page including advanced options.
Prints the version information.
Prints the copyright/license information.
Export the help page information. Value must be one of [html, man].
Provide a valid path to an index.
Provide a path to the query file. The input file must exist and read permissions must be granted.
Provide a path to the output.
The numer of threads to use. Default: 1. Value must be a positive integer.
Stores the computed thresholds with an unique name next to the index. In the next search call using this option, the stored thresholds are re-used. Two files are stored: threshold_*.bin: Depends on pattern, window, kmer/shape, errors, and tau. correction_*.bin: Depends on pattern, window, kmer/shape, p_max, and fpr.

raptor search --error 2 --index raptor.index --query queries.fastq --output search.output

Last update: 2021-08-20--no-git
Raptor version: 2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)
Sharg version: 1.0.0
SeqAn version: 3.2.0

https://github.com/seqan/raptor

Raptor Copyright: BSD 3-Clause License
Author: Enrico Seiler
Contact: enrico.seiler@fu-berlin.de
SeqAn Copyright: 2006-2022 Knut Reinert, FU-Berlin; released under the 3-clause BSDL.
In your academic works please cite: Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences; Enrico Seiler, Svenja Mehringer, Mitra Darvish, Etienne Turc, and Knut Reinert; iScience 2021 24 (7): 102782. doi: https://doi.org/10.1016/j.isci.2021.102782
For full copyright and/or warranty information see --copyright.

2021-08-20--no-git raptor 2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)