DOKK / manpages / debian 12 / staden-io-lib-utils / srf2fasta.1.en
srf2fasta(1) Staden io_lib srf2fasta(1)

srf2fasta - Converts SRF files to fasta format

srf2fasta [-C] srf_archive

srf2fasta extracts sequences from an SRF archive and writes them in fasta format to stdout.

Masks out sequences tagged as bad quality.

To extract only the good quality sequences from runX.srf into runX.fasta.


srf2fasta -C runX.srf > runX.fasta

James Bonfield, Wellcome Trust Sanger Institute

September 19