- in1=<table1>
The location of the first input table. This may take one
of the following forms:
- A filename.
- A URL.
- The special value "-", meaning standard input. In this
case the input format must be given explicitly using the ifmt1
parameter. Note that not all formats can be streamed in this way.
- A scheme specification of the form
:<scheme-name>:<scheme-args>.
- A system command line with either a "<" character at
the start, or a "|" character at the end
("<syscmd" or "syscmd|"). This
executes the given pipeline and reads from its standard output. This will
probably only work on unix-like systems.
In any case, compressed data in one of the supported compression formats (gzip,
Unix compress or bzip2) will be decompressed transparently.
- ifmt1=<in-format>
Specifies the format of the first input table as
specified by parameter
in1. The known formats are listed in SUN/256.
This flag can be used if you know what format your table is in. If it has the
special value
(auto) (the default), then an attempt will be made to
detect the format of the table automatically. This cannot always be done
correctly however, in which case the program will exit with an error
explaining which formats were attempted. This parameter is ignored for
scheme-specified tables.
- in2=<table2>
The location of the second input table. This may take one
of the following forms:
- A filename.
- A URL.
- The special value "-", meaning standard input. In this
case the input format must be given explicitly using the ifmt2
parameter. Note that not all formats can be streamed in this way.
- A scheme specification of the form
:<scheme-name>:<scheme-args>.
- A system command line with either a "<" character at
the start, or a "|" character at the end
("<syscmd" or "syscmd|"). This
executes the given pipeline and reads from its standard output. This will
probably only work on unix-like systems.
In any case, compressed data in one of the supported compression formats (gzip,
Unix compress or bzip2) will be decompressed transparently.
- ifmt2=<in-format>
Specifies the format of the second input table as
specified by parameter
in2. The known formats are listed in SUN/256.
This flag can be used if you know what format your table is in. If it has the
special value
(auto) (the default), then an attempt will be made to
detect the format of the table automatically. This cannot always be done
correctly however, in which case the program will exit with an error
explaining which formats were attempted. This parameter is ignored for
scheme-specified tables.
- icmd1=<cmds>
Specifies processing to be performed on the first input
table as specified by parameter
in1, before any other processing has
taken place. The value of this parameter is one or more of the filter commands
described in SUN/256. If more than one is given, they must be separated by
semicolon characters (";"). This parameter can be repeated multiple
times on the same command line to build up a list of processing steps. The
sequence of commands given in this way defines the processing pipeline which
is performed on the table.
Commands may alteratively be supplied in an external file, by
using the indirection character '@'. Thus a value of
"@filename" causes the file filename to be read for
a list of filter commands to execute. The commands in the file may be
separated by newline characters and/or semicolons, and lines which are blank
or which start with a '#' character are ignored.
- icmd2=<cmds>
Specifies processing to be performed on the second input
table as specified by parameter
in2, before any other processing has
taken place. The value of this parameter is one or more of the filter commands
described in SUN/256. If more than one is given, they must be separated by
semicolon characters (";"). This parameter can be repeated multiple
times on the same command line to build up a list of processing steps. The
sequence of commands given in this way defines the processing pipeline which
is performed on the table.
Commands may alteratively be supplied in an external file, by
using the indirection character '@'. Thus a value of
"@filename" causes the file filename to be read for
a list of filter commands to execute. The commands in the file may be
separated by newline characters and/or semicolons, and lines which are blank
or which start with a '#' character are ignored.
- ocmd=<cmds>
Specifies processing to be performed on the output table,
after all other processing has taken place. The value of this parameter is one
or more of the filter commands described in SUN/256. If more than one is
given, they must be separated by semicolon characters (";"). This
parameter can be repeated multiple times on the same command line to build up
a list of processing steps. The sequence of commands given in this way defines
the processing pipeline which is performed on the table.
Commands may alteratively be supplied in an external file, by
using the indirection character '@'. Thus a value of
"@filename" causes the file filename to be read for
a list of filter commands to execute. The commands in the file may be
separated by newline characters and/or semicolons, and lines which are blank
or which start with a '#' character are ignored.
- omode=out|meta|stats|count|checksum|cgi|discard|topcat|samp|tosql|gui
The mode in which the result table will be output. The
default mode is
out, which means that the result will be written as a
new table to disk or elsewhere, as determined by the
out and
ofmt parameters. However, there are other possibilities, which
correspond to uses to which a table can be put other than outputting it, such
as displaying metadata, calculating statistics, or populating a table in an
SQL database. For some values of this parameter, additional parameters
(
<mode-args>) are required to determine the exact behaviour.
Possible values are
- out
- meta
- stats
- count
- checksum
- cgi
- discard
- topcat
- samp
- tosql
- gui
Use the
help=omode flag or see SUN/256 for more information.
- out=<out-table>
The location of the output table. This is usually a
filename to write to. If it is equal to the special value "-" (the
default) the output table will be written to standard output.
This parameter must only be given if omode has its default
value of "out".
- ofmt=<out-format>
Specifies the format in which the output table will be
written (one of the ones in SUN/256 - matching is case-insensitive and you can
use just the first few letters). If it has the special value
"
(auto)" (the default), then the output filename will be
examined to try to guess what sort of file is required usually by looking at
the extension. If it's not obvious from the filename what output format is
intended, an error will result.
This parameter must only be given if omode has its default
value of "out".
- matcher=<matcher-name>
Defines the nature of the matching that will be
performed. Depending on the name supplied, this may be positional matching
using celestial or Cartesian coordinates, exact matching on the value of a
string column, or other things. A list and explanation of the available
matching algorithms is given in SUN/256. The value supplied for this parameter
determines the meanings of the values required by the
params,
values* and
tuning parameter(s).
- values1=<expr-list>
Defines the values from table 1 which are used to
determine whether a match has occurred. These will typically be coordinate
values such as RA and Dec and perhaps some per-row error values as well,
though exactly what values are required is determined by the kind of match as
determined by
matcher. Depending on the kind of match, the number and
type of the values required will be different. Multiple values should be
separated by whitespace; if whitespace occurs within a single value it must be
'quoted' or "quoted". Elements of the expression list are commonly
just column names, but may be algebraic expressions calculated from zero or
more columns as explained in SUN/256.
- values2=<expr-list>
Defines the values from table 2 which are used to
determine whether a match has occurred. These will typically be coordinate
values such as RA and Dec and perhaps some per-row error values as well,
though exactly what values are required is determined by the kind of match as
determined by
matcher. Depending on the kind of match, the number and
type of the values required will be different. Multiple values should be
separated by whitespace; if whitespace occurs within a single value it must be
'quoted' or "quoted". Elements of the expression list are commonly
just column names, but may be algebraic expressions calculated from zero or
more columns as explained in SUN/256.
- params=<match-params>
Determines the parameters of this match. This is
typically one or more tolerances such as error radii. It may contain zero or
more values; the values that are required depend on the match type selected by
the
matcher parameter. If it contains multiple values, they must be
separated by spaces; values which contain a space can be 'quoted' or
"quoted".
- tuning=<tuning-params>
Tuning values for the matching process, if appropriate.
It may contain zero or more values; the values that are permitted depend on
the match type selected by the
matcher parameter. If it contains
multiple values, they must be separated by spaces; values which contain a
space can be 'quoted' or "quoted". If this optional parameter is not
supplied, sensible defaults will be chosen.
- join=1and2|1or2|all1|all2|1not2|2not1|1xor2
Determines which rows are included in the output table.
The matching algorithm determines which of the rows from the first table
correspond to which rows from the second. This parameter determines what to do
with that information. Perhaps the most obvious thing is to write out a table
containing only rows which correspond to a row in both of the two input
tables. However, you may also want to see the unmatched rows from one or both
input tables, or rows present in one table but unmatched in the other, or
other possibilities. The options are:
- 1and2: An output row for each row represented in both input tables
(INNER JOIN)
- 1or2: An output row for each row represented in either or both of
the input tables (FULL OUTER JOIN)
- all1: An output row for each matched or unmatched row in table 1
(LEFT OUTER JOIN)
- all2: An output row for each matched or unmatched row in table 2
(RIGHT OUTER JOIN)
- 1not2: An output row only for rows which appear in the first table
but are not matched in the second table
- 2not1: An output row only for rows which appear in the second table
but are not matched in the first table
- 1xor2: An output row only for rows represented in one of the input
tables but not the other one
- find=all|best|best1|best2
Determines what happens when a row in one table can be
matched by more than one row in the other table. The options are:
- all: All matches. Every match between the two tables is included in
the result. Rows from both of the input tables may appear multiple times
in the result.
- best: Best match, symmetric. The best pairs are selected in a way
which treats the two tables symmetrically. Any input row which appears in
one result pair is disqualified from appearing in any other result pair,
so each row from both input tables will appear in at most one row in the
result.
- best1: Best match for each Table 1 row. For each row in table 1,
only the best match from table 2 will appear in the result. Each row from
table 1 will appear a maximum of once in the result, but rows from table 2
may appear multiple times.
- best2: Best match for each Table 2 row. For each row in table 2,
only the best match from table 1 will appear in the result. Each row from
table 2 will appear a maximum of once in the result, but rows from table 1
may appear multiple times.
The differences between
best,
best1 and
best2 are a bit
subtle. In cases where it's obvious which object in each table is the best
match for which object in the other, choosing betwen these options will not
affect the result. However, in crowded fields (where the distance between
objects within one or both tables is typically similar to or smaller than the
specified match radius) it will make a difference. In this case one of the
asymmetric options (
best1 or
best2) is usually more appropriate
than
best, but you'll have to think about which of them suits your
requirements. The performance (time and memory usage) of the match may also
differ between these options, especially if one table is much bigger than the
other.
- fixcols=none|dups|all
Determines how input columns are renamed before use in
the output table. The choices are:
- none: columns are not renamed
- dups: columns which would otherwise have duplicate names in the
output will be renamed to indicate which table they came from
- all: all columns will be renamed to indicate which table they came
from
If columns are renamed, the new ones are determined by
suffix*
parameters.
- suffix1=<label>
If the
fixcols parameter is set so that input
columns are renamed for insertion into the output table, this parameter
determines how the renaming is done. It gives a suffix which is appended to
all renamed columns from table 1.
- suffix2=<label>
If the
fixcols parameter is set so that input
columns are renamed for insertion into the output table, this parameter
determines how the renaming is done. It gives a suffix which is appended to
all renamed columns from table 2.
- scorecol=<col-name>
Gives the name of a column in the output table to contain
the "match score" for each pairwise match. The meaning of this
column is dependent on the chosen
matcher, but it typically represents
a distance of some kind between the two matching points. If a null value is
chosen, no score column will be inserted in the output table. The default
value of this parameter depends on
matcher.
- progress=none|log|time|profile
Determines whether information on progress of the match
should be output to the standard error stream as it progresses. For lengthy
matches this is a useful reassurance and can give guidance about how much
longer it will take. It can also be useful as a performance diagnostic.
The options are:
- none: no progress is shown
- log: progress information is shown
- time: progress information and some time profiling information is
shown
- profile: progress information and limited time/memory profiling
information are shown
- runner=parallel|parallel<n>|parallel-all|sequential|classic|partest
Selects the threading implementation. The options are
currently:
- parallel: uses multithreaded implementation for large tables, with
default parallelism, which is the smaller of 6 and the number of available
processors
- parallel<n>: uses multithreaded implementation for large
tables, with parallelism given by the supplied value <n>
- parallel-all: uses multithreaded implementation for large tables,
with a parallelism given by the number of available processors
- sequential: uses multithreaded implementation but with only a
single thread
- classic: uses legacy sequential implementation
- partest: uses multithreaded implementation even when tables are
small
The
parallel* options should normally run faster than
sequential
or
classic (which are provided mainly for testing purposes), at least
for large matches and where multiple processing cores are available.
The default value "parallel" is currently limited
to a parallelism of 6 since larger values yield diminishing returns given
that some parts of the matching algorithms run sequentially (Amdahl's Law),
and using too many threads can sometimes end up doing more work or impacting
on other operations on the same machine. But you can experiment with other
concurrencies, e.g. "parallel16" to run on 16 cores (if
available) or "parallel-all" to run on all available
cores.
The value of this parameter should make no difference to the
matching results. If you notice any discrepancies please report
them.