DOKK / manpages / debian 12 / subread / subread-fullscan.1.en
SUBREAD-FULLSCAN(1) User Commands SUBREAD-FULLSCAN(1)

subread-fullscan - toolkit for processing next-gen sequencing data

subread-fullscan Version 2.0.1

This program scans the entire genome to find all high-similarity locations to

a specified read.

Usage:

./subread-fullscan [options] -i <index_name> <read_string>

Required arguments:

Base name of the index.
The read bases.

Optional arguments:

The minimum fraction of matched bases in the read, 0.8 by default


This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.

March 2021 subread-fullscan 2.0.1