DOKK / manpages / debian 12 / surpyvor / surpyvor.1.en

User Commands

NAME

surpyvor - modification of VCF files with SURVIVOR

DESCRIPTION

usage: surpyvor [-h] [-v] {merge,highsens,highconf,prf,venn,upset} ...

A wrapper around SURVIVOR, with convenience functions.

optional arguments:

-h, --help: show this help message and exit
-v, --version: Print version and quit.

[sub-commands]:

: {merge,highsens,highconf,prf,venn,upset}

merge: merging vcf files of SVs
highsens: get union of SV vcfs
highconf: get intersection of SV vcfs
prf: calculate precision, recall and F-measure
venn: Make venn diagram for 2 or 3 SV vcf files
upset: Make upset plot for multiple SV vcf files

AUTHOR

This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.

July 2021

surpyvor 0.5