DOKK / manpages / debian 12 / vcftools / vcf-concat.1.en
VCF-CONCAT(1) User Commands VCF-CONCAT(1)

vcf-concat - concatenate VCF files

vcf-concat [OPTIONS] A.vcf.gz B.vcf.gz C.vcf.gz > out.vcf

About: Convenience tool for concatenating VCF files. In the basic mode it does not

do anything fancy except for a sanity check that all files have the same columns. When run with the -s option, it will perform a partial merge sort, looking at a limited number of open jobs simultaneously.

Read the list of files from a file.
Allow small overlaps in N consecutive files.
This help message.
July 2011 vcf-concat 0.1.5