DOKK / manpages / debian 12 / wigeon / cm_to_wigeon.1.en
CM_TO_WIGEON(1) User Commands CM_TO_WIGEON(1)

cm_to_wigeon - helper for wigeon (Pintail 16S DNA anomaly detection)

Unfortunately this tools that comes in connection with wigeon(1) is not documented but it regards the options below. If you know better about its purpose please drop us a note using reportbug on your Debian system.

multi-fasta file containing query sequences in alignment format
db in NAST format
db in fasta format (megablast formatted)

number of top matching database sequences to compare to (default 15)
min divergence ratio default: 1.007
min percent identity among matching sequences (default 90)

Scoring parameters:

match score (default: +5)
mismatch penalty (default: -4)
min query coverage by matching database sequence (default: 70)
maximum traverses of the multiple alignment (default: 1)

(default off)
verbose
cd here before running

http://microbiomeutil.sourceforge.net/

This manual page was written by Andreas Tille <tille@debian.org> but can be freely used for any other distribution.

June 2013 cm_to_wigeon