archive-nmcds - maintain a local NCBI RefSeq human mRNA
archive
archive-nmcds [[-][re]index]
[[-]clean|[-]clear|[-]scrub|[-]scour|[-]erase|[-]zap]
[-ftp|-http[s]]
archive-nmcds prepares a directory to hold a local NCBI
RefSeq human mRNA archive, then downloads a full database dump from NCBI's
servers, organizes the dump into an rchive(1) trie, and notes coding
regions' offsets.
- [-][re]index
- Fully reindex, complete with an inverted index.
- [-]clean|[-]clear
- Delete Indices contents and Increment files.
- [-]scrub
- Delete Indices contents, Increment files, and
Postings directories.
- [-]scour
- Delete Indices contents, Increment files, and
Postings, Data, Archive, and Sentinel
directories.
- [-]erase
- Delete Indices contents, Increment files, Postings,
Data, Archive, and Sentinel directories, and
Extras directory contents.
- [-]zap
- Delete entire archive.
- -ftp
- Download needed data via FTP (default).
- -http[s]
- Download needed data via HTTPS.
- EDIRECT_LOCAL_ARCHIVE
- Local archive directory to use; expected to hold an absolute path.
- EDIRECT_LOCAL_WORKING
- Directory to hold intermediate subtrees; expected to hold an absolute
path. Defaults to the local archive directory when not set.
archive-nihocc(1), archive-nlmnlp(1),
archive-pids(1), archive-pmc(1), archive-pubmed(1),
archive-taxonomy(1), nquire(1), pm-clean(1),
pm-prepare(1), pm-setup(1), rchive(1),
xfetch(1), xfilter(1), xinfo(1), xlink(1),
xsearch(1). xtract(1).