| Bio::Factory::FTLocationFactory(3pm) | User Contributed Perl Documentation | Bio::Factory::FTLocationFactory(3pm) |
Bio::Factory::FTLocationFactory - A FeatureTable Location Parser
# parse a string into a location object
$loc = Bio::Factory::FTLocationFactory->from_string("join(100..200,
400..500");
Implementation of string-encoded location parsing for the Genbank feature table encoding of locations.
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Jason Stajich, jason-at-bioperl-dot-org Chris Fields, cjfields-at-uiuc-dot-edu
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = Bio::Factory::FTLocationFactory->new(); Function: Builds a new Bio::Factory::FTLocationFactory object Returns : an instance of Bio::Factory::FTLocationFactory Args :
Title : from_string
Usage : $loc = $locfactory->from_string("100..200");
Function: Parses the given string and returns a Bio::LocationI implementing
object representing the location encoded by the string.
This implementation parses the Genbank feature table
encoding of locations.
Example :
Returns : A Bio::LocationI implementing object.
Args : A string.
Title : _parse_location
Usage : $loc = $locfactory->_parse_location( $loc_string)
Function: Parses the given location string and returns a location object
with start() and end() and strand() set appropriately.
Note that this method is private.
Returns : A Bio::LocationI implementing object or undef on failure
Args : location string
| 2020-10-28 | perl v5.30.3 |