| Bio::Search::Result::INFERNALResult(3pm) | User Contributed Perl Documentation | Bio::Search::Result::INFERNALResult(3pm) |
Bio::Search::Result::INFERNALResult - A Result object for INFERNAL results
# typically one gets Results from a SearchIO stream
use Bio::SearchIO;
my $io = Bio::SearchIO->new(-format => 'infernal',
-file => 't/data/cmsearch_output.txt');
while( my $result = $io->next_result ) {
while( my $hit = $result->next_hit ) {
print join(" ", $result->query_name, $result->algorithm, $result->num_hits), "\n";
}
}
This object is a specialization of Bio::Search::Result::GenericResult. There is one extra method called cm_name.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new
Usage : my $obj = Bio::Search::Result::INFERNALResult->new();
Function: Builds a new Bio::Search::Result::INFERNALResult object
Returns : Bio::Search::Result::INFERNALResult
Args : -cm_name => string, name of covariance model (CM) file.
plus Bio::Search::Result::GenericResult parameters
Title : cm_name Usage : $obj->cm_name($newvalue) Function: Get/Set value of the covariance model file name (cm_name) Returns : value of cm_name Args : newvalue (optional)
| 2020-10-28 | perl v5.30.3 |