| Bio::Seq::SeqFastaSpeedFactory(3pm) | User Contributed Perl Documentation | Bio::Seq::SeqFastaSpeedFactory(3pm) |
Bio::Seq::SeqFastaSpeedFactory - Rapid creation of Bio::Seq objects through a factory
use Bio::Seq::SeqFastaSpeedFactory;
my $factory = Bio::Seq::SeqFastaSpeedFactory->new();
my $seq = $factory->create( -seq => 'WYRAVLC',
-id => 'name' );
This factory was designed to build Bio::Seq objects as quickly as possible, but is not as generic as Bio::Seq::SeqFactory. It can be used to create sequences from non-rich file formats. The Bio::SeqIO::fasta sequence parser uses this factory.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
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Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
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Email jason@bioperl.org
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = Bio::Seq::SeqFastaSpeedFactory->new(); Function: Builds a new Bio::Seq::SeqFastaSpeedFactory object Returns : Bio::Seq::SeqFastaSpeedFactory Args : None
Title : create
Usage : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name');
Function: Instantiates a new Bio::Seq object, correctly built but very
fast, knowing stuff about Bio::PrimarySeq and Bio::Seq
Returns : A Bio::Seq object
Args : Initialization parameters for the sequence object we want:
-id
-primary_id
-display_id
-desc
-seq
-alphabet
| 2020-10-28 | perl v5.30.3 |