| Bio::Tools::Blat(3pm) | User Contributed Perl Documentation | Bio::Tools::Blat(3pm) |
Bio::Tools::Blat - parser for Blat program
use Bio::Tools::Blat;
my $blat_parser = Bio::Tools::Blat->new(-fh =>$filehandle );
while( my $blat_feat = $blat_parser->next_result ) {
push @blat_feat, $blat_feat;
}
Parser for Blat program
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new
Usage : my $obj = Bio::Tools::Blat->new(-fh=>$filehandle);
Function: Builds a new Bio::Tools::Blat object
Returns : Bio::Tools::Blat
Args : -filename
-fh (filehandle)
Title : next_result Usage : my $feat = $blat_parser->next_result Function: Get the next result set from parser data Returns : L<Bio::SeqFeature::Generic> Args : none
Title : create_feature Usage : my $feat=$blat_parser->create_feature($feature,$seqname) Function: creates a SeqFeature Generic object Returns : L<Bio::SeqFeature::Generic> Args :
| 2020-10-28 | perl v5.30.3 |