| Bio::Tools::RepeatMasker(3pm) | User Contributed Perl Documentation | Bio::Tools::RepeatMasker(3pm) |
Bio::Tools::RepeatMasker - a parser for RepeatMasker output
use Bio::Tools::RepeatMasker;
my $parser = Bio::Tools::RepeatMasker->new(-file => 'seq.fa.out');
while( my $result = $parser->next_result ) {
# get some value
}
A parser for RepeatMasker output
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = Bio::Tools::RepeatMasker->new(); Function: Builds a new Bio::Tools::RepeatMasker object Returns : Bio::Tools::RepeatMasker Args : -fh/-file => $val, for initing input, see Bio::Root::IO
Title : next_result
Usage : my $r = $rpt_masker->next_result
Function: Get the next result set from parser data
Returns : Bio::SeqFeature::FeaturePair
Feature1 is the Query coordinates and Feature2 is the Hit
Args : none
| 2020-10-28 | perl v5.30.3 |